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Publication search results
found 142 matches
- 2022
- Valérie de Crécy-Lagard, Rocio Amorin de Hegedus, Cecilia N. Arighi, Jill Babor, Alex Bateman, Ian Blaby, Crysten Blaby-Haas, Alan J. Bridge, Stephen K. Burley, Stacey Cleveland, Lucy J. Colwell, Ana Conesa, Christian Dallago, Antoine Danchin, Anita de Waard, Adam Deutschbauer, Raquel Dias, Yousong Ding, Gang Fang, Iddo Friedberg, John Gerlt, Joshua Goldford, Mark Gorelik, Benjamin M. Gyori, Christopher S. Henry, Geoffrey Hutinet, Marshall Jaroch, Peter D. Karp, Liudmyla Kondratova, Zhiyong Lu, Aron Marchler-Bauer, Maria Jesus Martin, Claire D. McWhite, Gaurav D. Moghe, Paul Monaghan, Anne Morgat, Christopher J. Mungall, Darren A. Natale, William C. Nelson, Seán I. O'Donoghue, Christine A. Orengo, Katherine H. O'Toole, Predrag Radivojac, Colbie Reed, Richard J. Roberts, Dmitri Rodionov, Irina A. Rodionova, Jeffrey DePons, Lana Saleh, Gloria M. Sheynkman, Françoise Thibaud-Nissen, Paul D. Thomas, Peter Uetz, David Vallenet, Erica Watson Carter, Peter Weigele, Valerie Wood, Elisha M. Wood-Charlson, Jin Xu:
A roadmap for the functional annotation of protein families: a community perspective. Database J. Biol. Databases Curation 2022(2022) (2022) - Peter D. Karp:
Reviewing knowledgebase and database grant proposals in the life sciences: the role of innovation. Database J. Biol. Databases Curation 2022(2022) (2022) - Hardik A. Jain, Vinti Agarwal, Chaarvi Bansal, Anupama Kumar, Faheem Faheem, Muzaffar-Ur-Rehman Mohammed, Sankaranarayanan Murugesan, Moana M. Simpson, Avinash V. Karpe, Rohitash Chandra, Christopher A. MacRaild, Ian K. Styles, Amanda L. Peterson, Matthew A. Cooper, Carl M. J. Kirkpatrick, Rohan M. Shah, Enzo A. Palombo, Natalie L. Trevaskis, Darren J. Creek, Seshadri S. Vasan:
CoviRx: A User-Friendly Interface for Systematic Down-Selection of Repurposed Drug Candidates for COVID-19. Data 7(11): 164 (2022) - Peter D. Karp, Suzanne M. Paley, Markus Krummenacker, Anamika Kothari, Michael J. Wannemuehler, Gregory J. Phillips:
Pathway Tools Management of Pathway/Genome Data for Microbial Communities. Frontiers Bioinform. 2 (2022) - 2021
- Peter D. Karp, Peter E. Midford, Richard Billington, Anamika Kothari, Markus Krummenacker, Mario Latendresse, Wai Kit Ong, Pallavi Subhraveti, Ron Caspi, Carol A. Fulcher, Ingrid M. Keseler, Suzanne M. Paley:
Pathway Tools version 23.0 update: software for pathway/genome informatics and systems biology. Briefings Bioinform. 22(1): 109-126 (2021) - Suzanne M. Paley, Peter D. Karp:
The BioCyc Metabolic Network Explorer. BMC Bioinform. 22(1): 208 (2021) - Neil S. Zheng, Jeremy L. Warner, Travis J. Osterman, Quinn Stanton Wells, Xiao-Ou Shu, Stephen A. Deppen, Seth J. Karp, Shon Dwyer, QiPing Feng, Nancy J. Cox, Josh F. Peterson, C. Michael Stein, Dan M. Roden, Kevin B. Johnson, Wei-Qi Wei:
A retrospective approach to evaluating potential adverse outcomes associated with delay of procedures for cardiovascular and cancer-related diagnoses in the context of COVID-19. J. Biomed. Informatics 113: 103657 (2021) - Jonghyun Lee, Eric F. Darve, Peter K. Kitanidis, Michael W. Mahoney, Anuj Karpatne, Matthew W. Farthing, Tyler J. Hesser:
Proceedings of the AAAI 2021 Spring Symposium on Combining Artificial Intelligence and Machine Learning with Physical Sciences, Stanford, CA, USA, March 22nd - to - 24th, 2021. CEUR Workshop Proceedings 2964, CEUR-WS.org 2021 [contents] - 2020
- Wai Kit Ong, Peter E. Midford, Peter D. Karp:
Taxonomic weighting improves the accuracy of a gap-filling algorithm for metabolic models. Bioinform. 36(6): 1823-1830 (2020) - Ron Caspi, Richard Billington, Ingrid M. Keseler, Anamika Kothari, Markus Krummenacker, Peter E. Midford, Wai Kit Ong, Suzanne M. Paley, Pallavi Subhraveti, Peter D. Karp:
The MetaCyc database of metabolic pathways and enzymes - a 2019 update. Nucleic Acids Res. 48(Database-Issue): D445-D453 (2020) - 2019
- Peter D. Karp, Richard Billington, Ron Caspi, Carol A. Fulcher, Mario Latendresse, Anamika Kothari, Ingrid M. Keseler, Markus Krummenacker, Peter E. Midford, Quang Ong, Wai Kit Ong, Suzanne M. Paley, Pallavi Subhraveti:
The BioCyc collection of microbial genomes and metabolic pathways. Briefings Bioinform. 20(4): 1085-1093 (2019) - Suzanne M. Paley, Peter D. Karp:
The MultiOmics Explainer: explaining omics results in the context of a pathway/genome database. BMC Bioinform. 20(1): 399:1-399:13 (2019) - Masoud Zabihi, Zhengyang Zhao, Zamshed I. Chowdhury, Salonik Resch, Mahendra DC, Thomas Peterson, Ulya R. Karpuzcu, Jianping Wang, Sachin S. Sapatnekar:
True In-memory Computing with the CRAM: From Technology to Applications. ACM Great Lakes Symposium on VLSI 2019: 379 - Masoud Zabihi, Zhengyang Zhao, D. C. Mahendra, Zamshed I. Chowdhury, Salonik Resch, Thomas Peterson, Ulya R. Karpuzcu, Jianping Wang, Sachin S. Sapatnekar:
Using Spin-Hall MTJs to Build an Energy-Efficient In-memory Computation Platform. ISQED 2019: 52-57 - 2018
- Bohdan B. Khomtchouk, Edmund Weitz, Peter D. Karp, Claes Wahlestedt:
How the strengths of Lisp-family languages facilitate building complex and flexible bioinformatics applications. Briefings Bioinform. 19(3): 537-543 (2018) - Mario Latendresse, Peter D. Karp:
Evaluation of reaction gap-filling accuracy by randomization. BMC Bioinform. 19(1): 53:1-53:13 (2018) - Peter D. Karp, Daniel S. Weaver, Mario Latendresse:
How accurate is automated gap filling of metabolic models? BMC Syst. Biol. 12(1): 73:1-73:11 (2018) - Ron Caspi, Richard Billington, Carol A. Fulcher, Ingrid M. Keseler, Anamika Kothari, Markus Krummenacker, Mario Latendresse, Peter E. Midford, Quang Ong, Wai Kit Ong, Suzanne M. Paley, Pallavi Subhraveti, Peter D. Karp:
The MetaCyc database of metabolic pathways and enzymes. Nucleic Acids Res. 46(Database-Issue): D633-D639 (2018) - 2017
- Bohdan B. Khomtchouk, Edmund Weitz, Peter D. Karp, Claes Wahlestedt:
How the strengths of Lisp-family languages facilitate building complex and flexible bioinformatics applications. Briefings Bioinform. 18(5): 905 (2017) - Suzanne M. Paley, Peter D. Karp:
Update notifications for the BioCyc collection of databases. Database J. Biol. Databases Curation 2017: bax086 (2017) - Ingrid M. Keseler, Amanda Mackie, Alberto Santos-Zavaleta, Richard Billington, César Bonavides-Martínez, Ron Caspi, Carol A. Fulcher, Socorro Gama-Castro, Anamika Kothari, Markus Krummenacker, Mario Latendresse, Luis Muñiz-Rascado, Quang Ong, Suzanne M. Paley, Martín Peralta-Gil, Pallavi Subhraveti, David A. Velázquez-Ramírez, Daniel S. Weaver, Julio Collado-Vides, Ian T. Paulsen, Peter D. Karp:
The EcoCyc database: reflecting new knowledge about Escherichia coli K-12. Nucleic Acids Res. 45(Database-Issue): D543-D550 (2017) - David A. Karpuk, Peter Moss:
Channel Pre-Inversion and Max-SINR Vector Perturbation for Large-Scale Broadcast Channels. IEEE Trans. Broadcast. 63(3): 494-506 (2017) - Tim Salimans, Andrej Karpathy, Xi Chen, Diederik P. Kingma:
PixelCNN++: Improving the PixelCNN with Discretized Logistic Mixture Likelihood and Other Modifications. ICLR (Poster) 2017 - Tim Salimans, Andrej Karpathy, Xi Chen, Diederik P. Kingma:
PixelCNN++: Improving the PixelCNN with Discretized Logistic Mixture Likelihood and Other Modifications. CoRR abs/1701.05517 (2017) - 2016
- Peter D. Karp, Mario Latendresse, Suzanne M. Paley, Markus Krummenacker, Quang Ong, Richard Billington, Anamika Kothari, Daniel S. Weaver, Thomas J. Lee, Pallavi Subhraveti, Aaron Spaulding, Carol A. Fulcher, Ingrid M. Keseler, Ron Caspi:
Pathway Tools version 19.0 update: software for pathway/genome informatics and systems biology. Briefings Bioinform. 17(5): 877-890 (2016) - Peter D. Karp:
How much does curation cost? Database J. Biol. Databases Curation 2016 (2016) - Peter D. Karp:
Crowd-sourcing and author submission as alternatives to professional curation. Database J. Biol. Databases Curation 2016 (2016) - Peter D. Karp:
Crowd-sourcing and author submission as alternatives to professional curation. Database J. Biol. Databases Curation 2016: baw149 (2016) - Suzanne M. Paley, Markus Krummenacker, Peter D. Karp:
Representation and inference of cellular architecture for metabolic reconstruction and modeling. Bioinform. 32(7): 1074-1079 (2016) - Suzanne M. Paley, Paul E. O'Maille, Daniel S. Weaver, Peter D. Karp:
Pathway collages: personalized multi-pathway diagrams. BMC Bioinform. 17: 529:1-529:10 (2016)
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